species:   Rhsol
pid:       PID0617
parent:    Rhi-milR-119
paralog:   
locus:     KB317777.1:7095-7207
matures:   ['UCAUUCAAGGGAGCGGAACAA', 'CAUCCGUUCCUUUGAGUACU']
srr:       SRR1994871
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram KB317777.1:7095-7207

4 out of bounds
39 alignments
33 proper strand
25 stranded perfect matches

                 **************************                           *************************                  
CUUGGGAUUUCUCUCCAAGUCAUUCAAGGGAGCGGAACAAAACUACAACACACACAACAAGGAACUCCUUGCUAUCAUCCGUUCCUUUGAGUACUGGCAAACAUUUCUGGAAG
.((.(((.......(((.((.(((((((((((((((.....................(((((....)))))......))))))))))))))))))))........))).))..
-------------------UCAUUCAAGGGAGCGGAACAA------------------------------------------------------------------------- l=21 a=0 c
---------------------------------------------------------------------------CAUCCGUUCCUUUGAGUACU------------------ l=20 a=0 c*
-------------------UCAUUCAAGGGAGCGGAACAAAAC---------------------------------------------------------------------- l=24 a=15 ma
------------------------------------------------------------------------UAUCAUCCGUUCCUUUGAGUACU------------------ l=23 a=0 ma*

-----------------------UCAAGGGAGCGGAACAAAAC---------------------------------------------------------------------- l=20 a=1 
-----------------------UCAAGGGAGCGGAACAAAACa--------------------------------------------------------------------- l=21 a=2 
-----------------------UCAAGGGAGCGGAACAAAACUA-------------------------------------------------------------------- l=22 a=1 
-----------------------UCAAGGGAGCGGAACAAAACUACAA----------------------------------------------------------------- l=25 a=1 
----------------------UUCAAGGGAGCGGAACAAAACUA-------------------------------------------------------------------- l=23 a=1 
---------------------uUUCAAGGGAGCGGAACAAAAC---------------------------------------------------------------------- l=22 a=2 
--------------------CAUUCAAGGGAGCGGAACAA------------------------------------------------------------------------- l=20 a=1 
--------------------CAUUCAAGGGAGCGGAACAAAAC---------------------------------------------------------------------- l=23 a=1 
-------------------UCuUUCAAGGGAGCGGAACAA------------------------------------------------------------------------- l=21 a=1 
-------------------UCAUUCAAGGGAGCGGAACAAA------------------------------------------------------------------------ l=22 a=1 
-------------------UCAUUCAAGGGAGCGGAACAAAA----------------------------------------------------------------------- l=23 a=2 
-------------------UCAUUCAAGGGAGCGGAACAAAAC---------------------------------------------------------------------- l=24 a=15 (ma)
-------------------UCuUUCAAGGGAGCGGAACAAAAC---------------------------------------------------------------------- l=24 a=3 
-------------------UCAUUCAAGGGAGCGGAACAAAACU--------------------------------------------------------------------- l=25 a=1 

mb-01011
ax-1001011
ku-01
ss-111111101100
fn-111
